General Information

Here are general information about the Advanced Prediction Configuration dialog window.

Advanced Prediction Configuration

• Overview

  In this dialog you can ...

  • turn on/off the AMBER force field.
  • choose a pdb template.

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Details

AMBER Force Field

• ColabFold can use an AMBER force field for energy minimization.
• The default is that the prediction runs with AMBER force field.
• If the prediction fails due to an unknown error, it may be helpful to turn off the force field.

PDB Template

• ColabFold can use pdb files as template.
• The default is that ColabFold uses the pdb70 database.
• If the prediction fails due to an unknown error, it may be helpful to switch None.

See Also

Add Sequence Import Sequence Import Protein Save Protein

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Related Overview

Sequences Proteins Protein Pairs